Livestock
Exp
-- Anser cygnoides --
Livestock Expression Portal
Portal
Search
Blast
Comparison
Specificity
Coexpression
Cross-species
Co-analysis
Summary
Cross-specific comparison gene expression
(0 Running Jobs, 0 Waiting Jobs)
Retrieve experiments of reference species
RNA-seq
Layout
PAIRED
SINGLE
ANY
Read length(>=)
45bp
70bp
100bp
150bp
300bp
Bases(>=)
0GB
500MB
1GB
2GB
4GB
6GB
8GB
10GB
12GB
Data Source
Source
PubMed
BioProject
GEO
ANY
Reference species - Anser cygnoides
Retrieve experiments of target species
Species
Choose a species to search coexpression ortholoues
[Anseriformes] Anas platyrhynchos, 605 experiments
[Artiodactyla] Bos grunniens, 246 experiments
[Artiodactyla] Bos taurus, 10977 experiments
[Artiodactyla] Capra hircus, 1643 experiments
[Artiodactyla] Ovis aries, 3782 experiments
[Artiodactyla] Sus scrofa, 10039 experiments
[Carnivora] Canis lupus familiaris, 2899 experiments
[Carnivora] Felis catus, 251 experiments
[Galliformes] Gallus gallus, 9122 experiments
[Galliformes] Meleagris gallopavo, 890 experiments
[Lagomorpha] Oryctolagus cuniculus, 1354 experiments
[Perissodactyla] Equus asinus, 76 experiments
[Perissodactyla] Equus caballus, 2053 experiments
RNA-seq
Layout
PAIRED
SINGLE
ANY
Read length(>=)
45bp
70bp
100bp
150bp
300bp
Base(>=)
0GB
1GB
2GB
3GB
4GB
5GB
6GB
7GB
8GB
9GB
10GB
11GB
12GB
Data Source
Source
PubMed
BioProject
GEO
ANY
Load experiments from this specified species ...
Target species
Upload experiments
ID & source
Species
Choose species
Reference
Target
Identifier
Source
Library & sequencing
Layout
Choose layout
PAIRED
SINGLE
Read length
Volume(GB)
Sample information
Ecotype/cultivar
Genotype
Tissue
Development
Treatment
Expression level files
Gene
Transcript
Splicing profile files
JCEC
JC
Uploaded experiments
Set group labels
Group1
Species 1:
No experiments selected
Species 2:
No experiments selected
Group2
Species 1:
No experiments selected
Species 2:
No experiments selected
Group3
Species 1:
No experiments selected
Species 2:
No experiments selected
Group4
Species 1:
No experiments selected
Species 2:
No experiments selected
Group5
Species 1:
No experiments selected
Species 2:
No experiments selected
Group6
Species 1:
No experiments selected
Species 2:
No experiments selected
Group7
Species 1:
No experiments selected
Species 2:
No experiments selected
Group8
Species 1:
No experiments selected
Species 2:
No experiments selected
Group9
Species 1:
No experiments selected
Species 2:
No experiments selected
Group10
Species 1:
No experiments selected
Species 2:
No experiments selected
Analysis parameters
Orthology group
Scope
1 : 1
all
Differential expression
Method
DESeq2
edgeR
Fold-Change
2
4
8
16
Q-Value
0.01
0.03
0.05
0.1
0.2
0.5
Model
exact test
likelihood ratio test
quasi-likelihood F test
Batch effect
?
Batch effect from studies can be fit when the selected studies cover control and treatment simultaneously. Otherwise, batch effect from studies will be ignored.
none
study
Metric
TPM
FPKM
Read counts per million
1
10
20
50
100
200
Expression consistency
Method
pearson
kendall
spearman
Coefficient(>=)
-0.9
-0.8
-0.7
-0.6
-0.5
-0.4
-0.3
-0.2
-0.1
0
0.1
0.2
0.3
0.4
0.5
0.6
0.7
0.8
0.9
Job name & E-mail
Job name
Email