Livestock
Exp
-- Equus asinus --
Livestock Expression Portal
Portal
Search
Blast
Comparison
Specificity
Summary
Search gene expressions by sequence similarity
Program
blastn
blastp
blastx
Database
cDNA
protein
E-value
Word size
16
20
24
28
32
64
128
256
Gap costs
Existence:5; Extension:2
Existence:2; Extension:2
Existence:1; Extension:2
Existence:0; Extension:2
Existence:3; Extension:1
Existence:2; Extension:1
Existence:1; Extension:1
Match/mimatch score
1, -2
1, -3
1, -4
2, -3
4, -5
1, -1
Expression Level
Metric
TPM
FPKM
Splicing profile
Metric
JCEC
JC
Read coverage
1
10
20
50
100
200
×
Alignment