Fish
Exp
-- Oryzias latipes --
Fish Expression Portal
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Coexpression
Cross-species
Co-analysis
Summary
Cross-specific comparison gene expression
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Retrieve experiments of reference species
RNA-seq
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Reference species - Oryzias latipes
Retrieve experiments of target species
Species
Choose a species to search coexpression ortholoues
[Acanthuriformes] Larimichthys crocea, 78 experiments
[Anguilliformes] Anguilla anguilla, 67 experiments
[Beloniformes] Oryzias melastigma, 45 experiments
[Carangiformes] Seriola dumerili, 32 experiments
[Characiformes] Astyanax mexicanus, 64 experiments
[Chimaeriformes] Callorhinchus milii, 11 experiments
[Cichliformes] Astatotilapia calliptera, 38 experiments
[Cichliformes] Haplochromis burtoni, 79 experiments
[Cichliformes] Maylandia zebra, 35 experiments
[Cichliformes] Oreochromis niloticus, 165 experiments
[Cichliformes] Pundamilia nyererei, 54 experiments
[Coelacanthiformes] Latimeria chalumnae, 20 experiments
[Cypriniformes] Carassius auratus, 97 experiments
[Cypriniformes] Cyprinus carpio, 96 experiments
[Cypriniformes] Danio rerio, 21701 experiments
[Cyprinodontiformes] Cyprinodon variegatus, 47 experiments
[Cyprinodontiformes] Fundulus heteroclitus, 24 experiments
[Cyprinodontiformes] Gambusia affinis, experiments
[Cyprinodontiformes] Nothobranchius furzeri, 325 experiments
[Cyprinodontiformes] Poecilia formosa, experiments
[Cyprinodontiformes] Poecilia latipinna, 24 experiments
[Cyprinodontiformes] Poecilia mexicana, 181 experiments
[Cyprinodontiformes] Poecilia reticulata, 125 experiments
[Esociformes] Esox lucius, 24 experiments
[Gadiformes] Gadus morhua, 0 experiments
[Gasterosteiformes] Gasterosteus aculeatus, 717 experiments
[Gymnotiformes] Electrophorus electricus, 11 experiments
[Lepisosteiformes] Lepisosteus oculatus, 23 experiments
[Myxiniformes] Eptatretus burgeri, 23 experiments
[Perciformes] Dicentrarchus labrax, 28 experiments
[Perciformes] Lates calcarifer, 64 experiments
[Perciformes] Sparus aurata, 51 experiments
[Perciformes] Stegastes partitus, 16 experiments
[Petromyzontiformes] Petromyzon marinus, 38 experiments
[Pleuronectiformes] Cynoglossus semilaevis, 24 experiments
[Pleuronectiformes] Paralichthys olivaceus, 146 experiments
[Pleuronectiformes] Scophthalmus maximus, 53 experiments
[Salmoniformes] Oncorhynchus kisutch, 69 experiments
[Salmoniformes] Oncorhynchus mykiss, 693 experiments
[Salmoniformes] Oncorhynchus tshawytscha, experiments
[Salmoniformes] Salmo trutta, 95 experiments
[Siluriformes] Ictalurus punctatus, 90 experiments
[Siluriformes] Pangasianodon hypophthalmus, experiments
RNA-seq
Layout
PAIRED
SINGLE
ANY
Read length(>=)
45bp
70bp
100bp
150bp
300bp
Base(>=)
0GB
1GB
2GB
3GB
4GB
5GB
6GB
7GB
8GB
9GB
10GB
11GB
12GB
Data Source
Source
PubMed
BioProject
GEO
ANY
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Target species
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ID & source
Species
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Target
Identifier
Source
Library & sequencing
Layout
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Read length
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Sample information
Strain
Genotype
Tissue
Development
Treatment
Expression level files
Gene
Transcript
Splicing profile files
JCEC
JC
Uploaded experiments
Set group labels
Group1
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Analysis parameters
Orthology group
Scope
1 : 1
all
Differential expression
Method
DESeq2
edgeR
Fold-Change
2
4
8
16
Q-Value
0.01
0.03
0.05
0.1
0.2
0.5
Model
exact test
likelihood ratio test
quasi-likelihood F test
Batch effect
?
Batch effect from studies can be fit when the selected studies cover control and treatment simultaneously. Otherwise, batch effect from studies will be ignored.
none
study
Metric
TPM
FPKM
Read counts per million
1
10
20
50
100
200
Expression consistency
Method
pearson
kendall
spearman
Coefficient(>=)
-0.9
-0.8
-0.7
-0.6
-0.5
-0.4
-0.3
-0.2
-0.1
0
0.1
0.2
0.3
0.4
0.5
0.6
0.7
0.8
0.9
Job name & E-mail
Job name
Email